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Species belonging to selected taxon:
Schmidtea mediterranea
ABOUT THIS RECORD
ID:
MNEST039147
species:
Schmidtea mediterranea
miRNA family:
mir-753
source:
miRBase, original name:
sme-mir-753d
(
MI0010940
)
Taxonomy by NCBI:
Schmidtea mediterranea
Schmidtea
Dugesiidae
Paludicola
Tricladida
Seriata
Turbellaria
Platyhelminthes
Acoelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGATCATTATTCAAGCTCTCT
miRNA*
AGGGCTTGGATTGTGATCTCG
mismatches:
3
bulges:
0
View larger
pre-miRNA
TC
AGGGCTTGGATTGTGATCTCG
TATATTTATG
AGATCATTATTCAAGCTCTCT
AAAT
dot-bracket secondary structure
..
(((((((((((.(((((((((
((....))))
))))))).)))))))))))..
....
SIMILARITIES
miRBase
sme-mir-753d
:
3e-27
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR,
RNA. 15:1483-1491(2009).
,
"Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"